Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.600 Biomarker disease RGD [Cyclooxygenase (COX)-2 expression in a rat duodenoesophageal reflux model and chemoprevention of adenocarcinoma by the selective COX-2 inhibitor nimesulide]. 17675820 2007
Entrez Id: 89780
Gene Symbol: WNT3A
WNT3A
0.020 AlteredExpression disease BEFREE Wnt target genes (AXIN2, c-MYC, Cyclin D1, Dkk1) and Wnt3a were significantly upregulated in nondysplastic BE compared with squamous mucosa. 26297437 2015
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.600 Biomarker disease BEFREE Wnt and cyclooxygenase 2 (Cox2) are two pathways whose activation has been associated with BE and progression to EAC, but their role has not been tested experimentally. 21969813 2011
Entrez Id: 6462
Gene Symbol: SHBG
SHBG
0.010 Biomarker disease BEFREE While plasma hormone and sex hormone-binding globulin concentrations were not associated with all cases of Barrett's esophagus, we did observe positive associations with estrogens in younger men (e.g. estrone + estradiol OR<sub>continuous per ½</sub><sub>IQR</sub><sub> </sub> = 2.92, 95%CI:1.08, 7.89), and free androgens in men with higher waist-to-hip ratios (e.g. free testosterone OR<sub>continuous per ½</sub><sub>IQR</sub><sub> </sub> = 2.71, 95%CI:1.06, 6.92). 28241109 2017
Entrez Id: 149233
Gene Symbol: IL23R
IL23R
0.020 GeneticVariation disease LHGDN While none of the polymorphisms were associated with NERD or ERD, the 1142G/A variant of the IL23R gene was found to be a risk variant in Barrett's esophagus patients. 18560602 2008
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 AlteredExpression disease BEFREE While Cdx2 is ectopically induced in the early metaplastic condition of Barrett's esophagus, its expression is not necessarily present in progressive Barrett's with dysplasia or adenocarcinoma. 21935353 2011
Entrez Id: 2933
Gene Symbol: GSM1
GSM1
0.010 Biomarker disease BEFREE When LGD was diagnosed in a low-volume GSP practice, the risk of progression was not significantly increased relative to patients with nondysplastic BE (hazard ratio, 1.3; 95% CI, .4-3.9). 29944863 2018
Entrez Id: 2778
Gene Symbol: GNAS
GNAS
0.010 Biomarker disease BEFREE When LGD was diagnosed in a low-volume GSP practice, the risk of progression was not significantly increased relative to patients with nondysplastic BE (hazard ratio, 1.3; 95% CI, .4-3.9). 29944863 2018
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.100 AlteredExpression disease BEFREE When bile acids were measured in oesophageal refluxate of rats with experimental Barrett's oesophagus, the concentration of CA was found to be consistent with the experimental dose that augmented Cdx2 expression in vitro. 16118348 2006
Entrez Id: 10763
Gene Symbol: NES
NES
0.010 GeneticVariation disease BEFREE We used esophageal squamous cell lines from patients who had GERD with Barrett's esophagus (normal esophageal squamous [NES]-B3T and NES-B10T) and without Barrett's esophagus (NES-G2T and NES-G4T) to study effects of acid and bile salts on expression of the CDX2 gene. 20303354 2010
Entrez Id: 3486
Gene Symbol: IGFBP3
IGFBP3
0.040 Biomarker disease BEFREE We used data and specimens from a longitudinal study of persons with Barrett's esophagus (n=344; median, 5.4 years follow up) to determine whether baseline serum concentrations of IGF-I and IGFBP-3 and associated polymorphisms were related to the risk of developing esophageal adenocarcinoma or flow cytometric abnormalities. 18006928 2007
Entrez Id: 4586
Gene Symbol: MUC5AC
MUC5AC
0.060 Biomarker disease BEFREE We studied three types of human tissue producing MUC5AC: Barrett's esophagus (BE), normal gastric tissue, and gastric metaplasia of the duodenum (GMD). 14535999 2003
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.040 AlteredExpression disease BEFREE We show here that p63 null embryos rapidly develop intestine-like metaplasia with gene expression profiles similar to Barrett's metaplasia. 21703447 2011
Entrez Id: 6121
Gene Symbol: RPE65
RPE65
0.030 AlteredExpression disease BEFREE We show here that p63 null embryos rapidly develop intestine-like metaplasia with gene expression profiles similar to Barrett's metaplasia. 21703447 2011
Entrez Id: 7405
Gene Symbol: UVRAG
UVRAG
0.030 AlteredExpression disease BEFREE We show here that p63 null embryos rapidly develop intestine-like metaplasia with gene expression profiles similar to Barrett's metaplasia. 21703447 2011
Entrez Id: 10970
Gene Symbol: CKAP4
CKAP4
0.030 AlteredExpression disease BEFREE We show here that p63 null embryos rapidly develop intestine-like metaplasia with gene expression profiles similar to Barrett's metaplasia. 21703447 2011
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 AlteredExpression disease BEFREE We report on one patient of nine studied with Barrett's esophagus who had trisomy 7 and showed increased expression of epidermal growth factor receptor. 2390926 1990
Entrez Id: 5989
Gene Symbol: RFX1
RFX1
0.010 AlteredExpression disease BEFREE We propose that this decreased expression of Rfx1 could be an indicator of progression from Barrett's esophagus to adenocarcinoma and that similar analyses of other transcription factors bound to silent genes can reveal unanticipated regulatory insights into oncogenic progression and cellular reprogramming. 21935353 2011
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.100 GeneticVariation disease BEFREE We measured p16 (CDKN2A/INK4A) lesions (loss of heterozygosity, mutations, and CpG island methylation), p53 (TP53) lesions (loss of heterozygosity, mutation) and ploidy abnormalities (aneuploidy, tetraploidy) within each Barrett's esophagus segment of a cohort of 267 research participants, who were followed prospectively with cancer as an outcome. 15492292 2004
Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
0.100 GeneticVariation disease BEFREE We measured p16 (CDKN2A/INK4A) lesions (loss of heterozygosity, mutations, and CpG island methylation), p53 (TP53) lesions (loss of heterozygosity, mutation) and ploidy abnormalities (aneuploidy, tetraploidy) within each Barrett's esophagus segment of a cohort of 267 research participants, who were followed prospectively with cancer as an outcome. 15492292 2004
Entrez Id: 9971
Gene Symbol: NR1H4
NR1H4
0.030 Biomarker disease BEFREE We looked for evidence of acid-induced DNA damage, including DSBs, in benign Barrett's epithelial (BAR-T) cell lines in vitro and in patients with Barrett's esophagus in vivo. 19920191 2009
Entrez Id: 51283
Gene Symbol: BFAR
BFAR
0.020 Biomarker disease BEFREE We looked for evidence of acid-induced DNA damage, including DSBs, in benign Barrett's epithelial (BAR-T) cell lines in vitro and in patients with Barrett's esophagus in vivo. 19920191 2009
Entrez Id: 154
Gene Symbol: ADRB2
ADRB2
0.020 Biomarker disease BEFREE We looked for evidence of acid-induced DNA damage, including DSBs, in benign Barrett's epithelial (BAR-T) cell lines in vitro and in patients with Barrett's esophagus in vivo. 19920191 2009
Entrez Id: 8856
Gene Symbol: NR1I2
NR1I2
0.310 AlteredExpression disease BEFREE We immunohistochemically evaluated expression of Hep Par 1 on 75 cases of Barrett esophagus (25 cases without dysplasia, 16 cases with low-grade dysplasia, 25 cases with high-grade dysplasia, and 9 cases with intramucosal adenocarcinoma) on endoscopic biopsies and endoscopic mucosal resections. 28187035 2018
Entrez Id: 2149
Gene Symbol: F2R
F2R
0.010 AlteredExpression disease BEFREE We immunohistochemically evaluated expression of Hep Par 1 on 75 cases of Barrett esophagus (25 cases without dysplasia, 16 cases with low-grade dysplasia, 25 cases with high-grade dysplasia, and 9 cases with intramucosal adenocarcinoma) on endoscopic biopsies and endoscopic mucosal resections. 28187035 2018